Computational Biophysics Group
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Type
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Date
2023
2022
2021
2020
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2018
2017
2016
Phosphorylation at Ser65 modulates ubiquitin conformational dynamics
Structure 31 (7) 884-890.e2 (2023)
Remy A Yovanno
,
Alvin Yu
,
Tyler J Wied
,
Albert Y Lau
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DOI
Strain and rupture of HIV-1 capsids during uncoating
Proceedings of the National Academy of Sciences, 119 (10), e2117781119, (2022)
Alvin Yu
,
Elizabeth M.Y. Lee
,
John AG Briggs
,
Barbie K Ganser-Pornillos
,
Owen Pornillos
,
Gregory A Voth
Cite
DOI
Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core
Nature Communications 13 (1), 1-12, (2022)
Alexander J Pak
,
Alvin Yu
,
Zunlong Ke
,
John AG Briggs
,
Gregory A Voth
Cite
DOI
Stability and molecular pathways to the formation of spin defects in silicon carbide
Nature Communications 12 (1), 1-8, (2021)
Elizabeth M.Y. Lee
,
Alvin Yu
,
Juan J de Pablo
,
Giulia Galli
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DOI
Integrin-based mechanosensing through conformational deformation
Biophysical Journal 120 (20), 4349-4359, (2021)
Tristan P Driscoll
,
Tamara C Bidone
,
Sang Joon Ahn
,
Alvin Yu
,
Alexander Groisman
,
Gregory A Voth
,
Martin A Schwartz
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DOI
A multiscale coarse-grained model of the SARS-CoV-2 virion
Biophysical Journal 120 (6), 1097-1104, (2021)
Alvin Yu
,
Alexander J Pak
,
Peng He
,
Viviana Monje-Galvan
,
Lorenzo Casalino
,
Zied Gaieb
,
Abigail C Dommer
,
Rommie E Amaro
,
Gregory A Voth
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DOI
Temperature and phase transferable bottom-up coarse-grained models
Journal of Chemical Theory and Computation 16 (11), 6823-6842, (2020)
Jaehyeok Jin
,
Alvin Yu
,
Gregory A Voth
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DOI
Atomic-scale characterization of mature HIV-1 capsid stabilization by inositol hexakisphosphate (IP6)
Science Advances 6 (38), eabc6465, (2020)
Alvin Yu
,
Elizabeth M.Y. Lee
,
Jaehyeok Jin
,
Gregory A Voth
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DOI
TRIM5α self-assembly and compartmentalization of the HIV-1 viral capsid
Nature Communications 11 (1), 1-10, (2020)
Alvin Yu
,
Katarzyna A Skorupka
,
Alexander J Pak
,
Barbie K Ganser-Pornillos
,
Owen Pornillos
,
Gregory A Voth
Cite
DOI
Off-pathway assembly: a broad-spectrum mechanism of action for drugs that undermine controlled HIV-1 viral capsid formation
Journal of the American Chemical Society 141 (26), 10214-10224, (2020)
Alexander J Pak
,
John MA Grime
,
Alvin Yu
,
Gregory A Voth
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DOI
Glutamate and glycine binding to the NMDA receptor
Structure 26 (7), 1035-1043. e2, (2018)
Alvin Yu
,
Albert Y Lau
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DOI
Neurotransmitter Funneling Optimizes Glutamate Receptor Kinetics
Neuron 97 (1), 139-149. e4, (2018)
Alvin Yu
,
Héctor Salazar
,
Andrew JR Plested
,
Albert Y Lau
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DOI
Energetics of glutamate binding to an ionotropic glutamate receptor
The Journal of Physical Chemistry B 121 (46), 10436-10442, (2017)
Alvin Yu
,
Albert Y Lau
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DOI
Computing Conformational Free Energies of iGluR Ligand-Binding Domains
Ionotropic Glutamate Receptor Technologies, 119-132, (2016)
Alvin Yu
,
Tyler Wied
,
John Belcher
,
Albert Y Lau
Cite
DOI
Molecular lock regulates binding of glycine to a primitive NMDA receptor
Proceedings of the National Academy of Sciences 113 (44), E6786-E6795, (2016)
Alvin Yu
,
Robert Alberstein
,
Alecia Thomas
,
Austin Zimmet
,
Richard Grey
,
Mark L Mayer
,
Albert Y Lau
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DOI
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